Data matrices for "Missing Data and Model Selection in Phylogenomics: A Re-Evaluation of Cicadomorpha (Hemiptera: Auchenorrhyncha) Superfamily Level Relationships Under Site-Heterogeneous Models"

The included files are the alignments of DNA or amino acid sequences used for phylogenetic analyses of Auchenorrhyncha (Insecta: Hemiptera) in the manuscript by Bin et al. submitted to the journal “Systematic Entomology.” The files are plain text in either FASTA (.fa or .fas suffix) or PHYLIP (.phy suffix) format. Matrix0 is the set of all loci after multiple sequence alignment and trimming (hereafter called). Matrix1 consists of loci having 75% average bootstrap support and 80% taxon completeness (hereafter called Matrix1). Matrix2 consists of loci having 75% average bootstrap support and 95% completeness. Matrix2_nt12 is the same as Matrix2 but with third codon positions excluded. More details on how the datasets were compiled is provided in the Methods section of the manuscript file, also included as a PDF. Supplemental figures for the submitted manuscript are also provided as a PDF for additional information.

所包含的文件为 Bin 等作者提交至《系统昆虫学》杂志的稿件中，用于 Auchenorrhyncha (Insecta: Hemiptera) 系统发育分析的 DNA 或氨基酸序列对齐文件。这些文件采用纯文本格式，并遵循 FASTA (.fa 或 .fas 后缀) 或 PHYLIP (.phy 后缀) 格式。Matrix0 包含了多重序列对齐和修剪后所有的位点（以下简称 Matrix0）。Matrix1 包含了平均bootstrap支持率为 75% 且物种完整性达到 80% 的位点（以下简称 Matrix1）。Matrix2 包含了平均bootstrap支持率为 75% 且完整性达到 95% 的位点。Matrix2_nt12 与 Matrix2 相同，但排除了第三个密码子位置。关于数据集汇编的更多细节可在稿件文件的“方法”部分找到，该文件亦作为 PDF 格式提供。此外，还提供了提交的稿件补充图作为 PDF 格式，以供额外信息参考。