Additional file 1 of Genomic analysis reveals convergent signatures of selection for milk traits in sheep and goats

Additional file 1: Table S1. WGS data information. Table S2. SNP information. Table S3. Statistics on diversity parameters of different goat breeds. Table S4. Statistics on diversity parameters of different sheep breeds. Table S5. The top 1% of candidate genes under selection in goats by FST. Table S6. The top 1% of candidate genes under selection in goats by π ratio. Table S7. Overlapping selection candidate genes in goats by FST and π ratio. Table S8. The top 5% of candidate genes under selection in sheep by FST. Table S9. The top 5% of candidate genes under selection in sheep by π ratio. Table S10. Overlapping selection candidate genes in sheep by FST and π ratio. Table S11. KEGG pathway enrichment of candidate genes selected by FST and π ratio in goats and sheep. Table S12. Description of RNA-seq datasets in goats and sheep. Table S13. Gene expression count matrix of goat RNA-seq data. Table S14. Gene expression TPM Matrix of goat RNA-seq data. Table S15. Goat DESeq2 result of dry period vs. peak lactation. Table S16. Goat DESeq2 result of early vs. late lactation. Table S17. Goat DESeq2 result of early vs. peak lactation. Table S18. Gene expression count matrix of sheep RNA-seq data. Table S19. Gene expression TPM matrix of sheep RNA-seq data. Table S20. Sheep DESeq2 result of dairy vs. non-dairy.