meta_data

tblhctmeta.csv: Day and source of hematopoietic cell transplant (HCT) for 1,278 patientsPatientID: deidentified identifier of patientsTimepointOfTransplant: deidentified day of HCTHCTSource: hematopoietic cell sources for HCT patients (BM_unmodified: bone marrow; PBSC_unmodified: peripheral blood stem cells; TCD: T-cell depleted; cord: cord blood)Disease: disease of patientswbcPatientId, autoFmtPatientId, nejmPatientId: identifiers for the same patients if they were also included in another previous study (wbcPatientId: Schluter, J. et al. 2019. The gut microbiota influences circulatory immune cell dynamics in humans. BioRxiv; autoFmtPatientId: Taur, Y. et al. 2018. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. Science Translational Medicine 10(460); nejmPatientId: Peled, J.U. et al. 2020. Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation. New England Journal of Medicine, 382(9), pp.822-834.)tbldrug.csv: Timing and route of drug administration for 1,279 patientsPatientID: deidentified identifier of patientsStartTimepoint: deidentified day when drug administration startedStopTimepoint: deidentified day when drug administration stopped (including the day)Factor: name of the drugCategory: category of the drugRoute: route of drug administrationStartDayRelativeToNearestHCT/StopDayRelativeToNearestHCT: start/stop day of the drug administration relative to the nearest day of bone marrow transplanttblInfectionsCidPapers.csv: Day of positive blood cultures for 426 patients (include only microbes analyzed in 1. Taur, Y., et al. 2012. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. Clinical infectious diseases, 55(7), pp.905-914; 2. Stoma, I., et al. 2020. Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria. Clinical Infectious Diseases.)PatientID: deidentified identifier of patientsTimepoint: deidentified day of infectionInfectiousAgent: the bacteria causing infectionsDayRelativeToNearestHCT: day of infection relative to the nearest day of bone marrow transplanttblwbc.csv: Daily measurements of white blood cells for 1,242 patientsPatientID: deidentified ID of patientsTimepoint: deidentified day of blood cell measurementBloodCellType: lymphocyte cells (Lymphocytes), neutrophil cells (Neutrophils), and total white blood cells (WBCtotal)Value: blood cell counts (unit: 1,000 cells/uL)DayRelativeToNearestHCT: day of blood cell measurement relative to the nearest day of bone marrow transplanttbltemperature.csv: temperatures for 1,249 patientsPatientID: deidentified identifier of patientsTimepoint: deidentified day when patient temperature was measuredMaxTemperature: Maximum temperature (unit: Fahrenheit) recorded on that day for that patientDayRelativeToNearestHCT: day of temperature measurement relative to the nearest day of bone marrow transplanttblVanA.csv: Results of PCR detection for vanA gene for 7,547 samplesSampleID: stool sample identifier VanA: whether vanA gene is detected in the sample