Summary of the genes that showed highly reduced RNAP binding in the <i>rpoA</i><sup><i>del</i></sup>-expressing cells, as identified by ChAP-chip analysis.
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a: Information regarding the TUs was acquired from DBTBS and Bsubcyc. [35, 36] b: The down-regulated genes identified by our transcriptomic analysis are indicated with "Y." c: TFs whose binding sites have been identified near the transcriptional start site (TSS) of each gene. Parentheses indicate TFs whose involvement have been suggested by genetic analysis (i.e., gene knockout), but whose binding sites not yet been identified. d: An essential gene is indicated with "Y." e: The information on gene function was mainly acquired from the Panther database (http://www.pantherdb.org/), while the functions of mtlF, cspB, ypzK and sigX were obtained from the Bsubcyc (mtlF) [36] and BSORF (others) databases (http://bacillus.genome.ad.jp/). Summary of the genes that showed highly reduced RNAP binding in the rpoAdel-expressing cells, as identified by ChAP-chip analysis.
