Data from: Genomic differentiation during speciation-with-gene-flow: comparing geographic and host-related variation in divergent life history adaptation in Rhagoletis pomonella

VCF file for all individuals and SNPs included in the study.This is a VCF file generated using the GATK Unified Genotyper, then filtered as describe in the paper. The PL field provides the phred-scaled and normalized genotype probabilities produced using the GATK model.DoellmanGenes2018.vcfNatural or experimental population for each individual in the studyColumn 1 contains the individual ID for each sample in the study. Column 2 contains the site and host for each of the geographic populations or the treatment group for each experiment (Haw/Apple_E or Haw/Apple_L for early and late eclosing flies, respectively; GrantHaw/Apple32d or GrantHaw/Apple7d for prewinter selected or control samples, respectively).DoellmanGenes2018.ids.txtGrantApple.fq.gzFastq file containing demultiplexed sequences for the control (7 day) samples from the apple selection experiment.GrantApple32d.fq.gzFastq file containing demultiplexed sequences for the long pre-winter treatment (32 day) samples from the apple selection experiment.GrantHawthorn.fq.gzFastq file containing demultiplexed sequences for the control (7 day) samples from the hawthorn selection experiment.GrantHawthorn32d.fq.gzFastq file containing demultiplexed sequences for the long pre-winter treatment (32 day) samples from the hawthorn selection experiment.