Genome data from Effrenium voratum CCMP421, RCC1521, and rt-383 and their analysis

This dataset represents secondary data generated from the genomic analysis of three isolates of Effrenium voratum (CCMP421, RCC1521, and rt-383), the early-diverging, free-living lineage of Symbiodiniaceae dinoflagellates. Theese data include (A) assembled genome sequences, predicted gene models and protein sequences, and (B) data and scripts associated with generation of graphs and figures presented in the key genome paper (Shah et al., 2024, Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates, under review in ISME Journal). An earlier preprint of this manuscript is available at bioRxiv: https://doi.org/10.1101/2023.03.24.534093.

A. Genome assemblies, annotation and gene models. The dataset includes, for each taxon, (a) the de novo assembled genome sequences in FASTA format (*genome.fa.tgz), (b) structural annotation of the assembled genome in GFF3 format (*.genome.annotation.gff3.tgz), (c) the predicted protein-coding sequences of gene models in FASTA format (*genemodel.CDS.fa.tgz), (d) the predicted protein sequences of gene models in FASTA format (*genemodel.PROT.fa.tgz), and (c) the associated sequences and gene annotations of organellar genomic sequences (i.e. mitochondrial and plastid) (*organellar.tgz). Functional annotations of all gene models from the three genomes are available in the Excel spreadsheet (*GeneModels.xlsx).

B. Data and scripts associated with generation of graphs and figures in Shah et al. (2024). These files are organised based on key analyses specific to main figures and supplementary figures in the paper.

See README.txt for a more-detailed description of the files.