Additional file 1 of Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing

Additional file 1: Supplementary Table 1. The genetic variation information of SNPs and indels in sheep breeds. Supplementary Table 2. The level of genetic diversity in the four populations. Supplementary Table 3. Amount of ROH at different lengths. Supplementary Table 4. Host genes of CKA Specific missense mutations for GO and KEGG analysis. Supplementary Table 5. Summary of candidate genes in the Chaka sheep population detected by XP-CLR statistics. Supplementary Table 6. The list of GO and KEGG analyses for genes with high selection signature by XP-CLR. Supplementary Table 7. Summary of candidate genes in four sheep populations detected by Fst statistics. Supplementary Table 8. The list of GO and KEGG analyses for genes with high selection signature by Fst. Supplementary Table 9. The range and amount of sequence data. Supplementary Table 10. Sample collection and sequencing information. Supplementary Table 11. Optimum for population differentiation according to CV errors.