GG_2025 data supplement

This repository contains data for the manuscript "Male XIST expression in cardiac pseudo-glia does not induce X chromosome inactivation." The files are generated by notebooks in the GitHub repository. The human folder contains pseudobulks from human data. The files gg_250327_heart_celltype_psbulks.p and gg_250821_heart_data_split_by_xist.p are pickled Python dicts containing AnnData structures. The files gg_250821_female_glia_deseq.anndata.p and gg_250821_male_glia_deseq.anndata.p are pickled AnnData structures. The bam folder contains are XIST-localized aligned reads from Larson and Chin. The files in de_tables are tables of differential expression for various PyDESeq2 contrasts. The files in nonhuman are scVI-clustered macaque and mouse heart dataset. The genome folder contains a gtf file with putative M. mulatta XIST lifted over to M. fascicularis.