Artifacts for q2-micom
收藏NIAID Data Ecosystem2026-03-11 收录
下载链接：
https://zenodo.org/record/3608329
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资源简介：
This repository hosts artifacts for use with q2-micom and MICOM. In particular it provides summarized metabolic model databases and growth media.
Model databases
Model databases are provided for family, genus and species ranks. AGORA is a manually curated database of 818 high quality metabolic reconstructions. Raw data was obtained from https://www.vmh.life/.
CarveME is an automatically reconstructed database but offers much more organisms (>5K strains). Raw data was obtained from https://github.com/cdanielmachado/embl_gems.
Diets
We currently only provide an average western diet which is only compatible with AGORA.
创建时间：
2020-04-17
