Artifacts for q2-micom

This repository hosts artifacts for use with q2-micom and MICOM. In particular it provides summarized metabolic model databases and growth media. Model databases Model databases are provided for family, genus and species ranks. AGORA is a manually curated database of 818 high quality metabolic reconstructions. Raw data was obtained from https://www.vmh.life/. CarveME is an automatically reconstructed database but offers much more organisms (>5K strains). Raw data was obtained from https://github.com/cdanielmachado/embl_gems. Diets We currently only provide an average western diet which is only compatible with AGORA.