Additional file 2 of A graph neural network-based interpretable framework reveals a novel DNA fragility–associated chromatin structural unit

Additional file 2: Table S1. Robustness evaluation for DSB-GNN against different Hi-C processing parameters. Table S2. Results of ablation experiments. Table S3. Performance comparison between DSB-GNN, LightGBM and Random Forest with different subsets of features. Table S4. The distribution of 1D genomic distance from prediction site to 1-hop and 2-hop neighbours. Table S5. 1242 loops with at least one anchor developing DSBs. Table S6. Comparison of different thresholds for contact counts. Table S7. Comparison of different numbers of GAT or GCN layers.