Supplementary Table S4 from BAP1 Loss Is Associated with DNA Methylomic Repatterning in Highly Aggressive Class 2 Uveal Melanomas

HyperMethvsDecGE_ChrLoc: Chromosomal loci enriched (FDR < 0.05) for hypermethylated/downregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HypoMethvsIncGE_ChrLoc: Chromosomal loci enriched (FDR < 0.05) for hypomethylated/upregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HyperMethvsDecGE_KEGG_REACTOME: Functional (KEGG and REACTOME) pathways enriched (FDR < 0.05) for hypermethylated/downregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HypoMethvsIncGE_KEGG_REACTOME: Functional (KEGG and REACTOME) pathways enriched (FDR < 0.05) for hypomethylated/upregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HyperMethvsDecGE_GO: Gene ontology molecular functions enriched (FDR < 0.05) for hypermethylated/downregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HypoMethvsIncGE_GO: Gene ontology molecular functions enriched (FDR < 0.05) for hypomethylated/upregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HyperMethvsDecGE_TF: Promoter region transcription factor binding sites enriched (FDR < 0.05) for hypermethylated/downregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas HypoMethvsIncGE_TF: Promoter region transcription factor binding sites enriched (FDR < 0.05) for hypomethylated/upregulated genes in Class 2 uveal melanomas compared to Class 1 uveal melanomas