Additional file 1: Table S1. of Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx

Genotypes of replicate samples. Table S2. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PDON pool. Table S3. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PAND pool. Table S4. Basic population genetics statistics per autosomal marker for both genetic pools. Table S5. Basic population genetics statistics per X-linked marker for both genetic pools. Table S6. Results for HWE analysis per autosomal marker for the PDON pool. Table S7. Results for HWE analysis per autosomal marker for the PAND pool. Table S8. Results for HWE analysis per X-linked marker for the PDON pool. Table S9. Results for HWE analysis per X-linked marker for the PAND pool. Table S10. Hemimatrix of pairwise r 2 values between autosomal markers for the PDON pool. Table S11. Hemimatrix of pairwise r 2 values between autosomal markers for the PAND pool. Table S12. Hemimatrix of pairwise r 2 values between X-linked markers for the PDON pool. Table S13. Hemimatrix of pairwise r 2 values between X-linked markers for the PAND pool. Table S14. Hemimatrix of Kendall rank correlation τ values between HE and statistics selected to rank markers. Table S15. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of SNPs in the 343 SNP panel. Table S16. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of STRs in the 36 STR panel. Table S17. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification rates of simulated individuals in eight ancestry levels, for differently-sized and -ranked SNP and STR panels. Table S18. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification values (and percentages) of empirical individuals in eight ancestry levels, for different-sized SNP and STR panels. (XLSX 33994 kb)