Raw Counts: A protocol for low-input RNA-sequencing of patients with febrile neutropenia captures relevant immunological information

Raw counts for scientific article: 

"A protocol for low-input RNA-sequencing of patients with febrile neutropenia captures relevant immunological information"

Victoria Probst*1, Lotte Møller Smedegaard*2, Arman Simonyan1, Yuliu Guo1, Olga Østrup1, Kia Hee Schultz Dungu2, Nadja Hawwa Vissing2, Ulrikka Nygaard2 and Frederik Otzen Bagger1

*Shared first authorship

Data description: 

The raw counts are from 88 samples of 22 patients with leukaemia and suspected infection sequenced by a low-input protocol (Takara SMART-seq HT) (96% succeeded) and 15 of these were also processed by the standard protocol (Truseq).

CLI.CSV: Raw counts of control samples processed using a low input RNA sequencing protocol. 15 samples processed by the low-input protocol.  

CRNA.CSV: Raw counts of control samples processed using a standard RNA sequencing protocol. 15 samples processed by the standard protocol. 

FEB.CSV: Raw gene counts from patients. 88 samples processed by the low input protocol. 4 samples failed sequencing.