lapalombella.pu.datapkg_0.0.0.9019.tar.gz

This is an R Data Package with processed data necessary to reproduce the R-based scRNA-seq figures from the manuscript.<br>Steps to reproduce selected figures:System RequirementsR v4.4RstudioThis software has been tested on Linux Ubuntu 22Loading the complete dataset occupies approximately 8 GB memory.<br>2. Installationdownload this object in a convenient location on your system.clone the analysis project to your computer using git clone https://github.com/blaserlab/lapalombella_puopen the R projecta list of the packages required for the project can be found in library_catalogs/blas02_lapalombella_pu.tsv. Filter for packages with status == "active". Install these packages and their dependencies.install custom packages from our R Universe repository using these commands:install.packages('blaseRtools', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))install.packages('blaseRtemplates', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))install.packages('blaseRdata', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))source R/dependencies.R (the final line in that file must be edited to point to the directory containing the data package)source R/configs.R (the file paths defining the output variables should be customized for your system)see R/figs.R. Run the desired code blocks to reproduce the appropriate figure.typical time required for the first installation and data loading is approximately 15 minutes. This excludes the time required to download the data package.<br>