Additional file 3: Table S1. Nuclear transcripts from Leontynka pallida specifically discussed in the paper. Table S2. Comparison of GC content, number of imperfect palindromes, and potential quadrupl
Intersections between annotation files calculated with P-clouds, TRF, and REPET. Venn diagram describing the overlaps between the annotation files calculated with P-clouds, TRF (SSR), REPET (TE + DM),
The folder "Concatenation_11S_no_missing.fas" contains the concatenated dataset of 11S_no_missing. The folder "Concatenation_103S_missing_0.25.fas" contains the concatenated dataset of 103S_missing_0.