Evolutionary dynamics and molecular epidemiology of H1N1 pandemic 2009 influenza A viruses across swine farms in Denmark

Supporting files for manuscript "Evolutionary dynamics and molecular epidemiology of H1N1 pandemic 2009 influenza A viruses across swine farms in Denmark" include: isolates.xlsx (list of all IAV isolates in the sequencing dataset) alignment_* (segment sequence alignments) iqtree_* (IQ-TREE log files and contree outputs) treetime_* (selected TreeTime output) mutation_tree_* (phylogenetic molecular clock trees with annotated mutations)