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Mock community of bacteria and mouse-derived cell line Raw sequence reads

NIAID Data Ecosystem2026-04-25 收录

微生物组学模拟群落

基因组测序污染控制

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP201312 数据链接链接失效反馈

官方服务：

资源简介：

DNA of mock community of bacteria spiked with DNA of a mouse-derived cell line

应用场景：

创建时间：

2019-06-14

宏条形码数据纠错

基因组测序污染控制

Metabarcoding of environmental samples on second-generation sequencing platforms has rapidly become a valuable tool for ecological studies. A fundamental assumption of this approach is the reliance on

DataONE2015-03-03 更新80

Managing contamination and diverse bacterial loads in 16S rRNA deep sequencing of clinical samples - implications of the law of small numbers

基因组测序污染控制

临床微生物组学

In this article, we investigate patterns of microbial DNA contamination in targeted 16S rRNA amplicon sequencing (16S deep sequencing) and demonstrate how this can be used to filter background bacteri

NIAID Data Ecosystem50

Additional file 7 of cDNA-detector: detection and removal of cDNA contamination in DNA sequencing libraries

基因组测序污染控制

生物信息学工具

Additional file 7. cDNAs detected by Vecuum in select samples from TCGA, ENCODE and NCBI SRA datasets.

NIAID Data Ecosystem30

Additional file 5 of cDNA-detector: detection and removal of cDNA contamination in DNA sequencing libraries

基因组测序污染控制

DNA污染检测

Additional file 5. Identified cDNAs in select human samples from the NCBI SRA.

NIAID Data Ecosystem60

serial dilutions of mock community to assess contaminant and spurious assignment of taxa. Mock communities