Key-Residue-Annotate's Intermediary Files (resources/)

Key-Residue-Annotate: databases and required files Upon extraction to a desired directory, use its absolute path in the following arguments inside the config.ini or command line for your KRA run: Paths.resource_dir: The absolute path correspond to the resource_dir path. Inputs.hmm: extending the former with a "/hmm/Pfam-A.hmm" constitutes the hmm input. Refer to the following example config.ini for the H. sapiens reference proteome, UP000005640: [Inputs]fasta = /home/eduardohorta/KRA/data/fasta/proteomes/HUMAN_UP000005640_9606_31_03_2025.fastahmm = /home/eduardohorta/KRA/resources/hmm/Pfam-A.hmm [Paths]iprscan_path = /home/eduardohorta/my_interproscan/interproscan-5.73-104.0/interproscan.shresource_dir = /home/eduardohorta/KRA/resources/output_dir = /home/eduardohorta/KRA/git_repos/KRA/results/validation/HUMAN/python = /home/eduardohorta/anaconda3/envs/key_residue_annotate/bin/python3log = /home/eduardohorta/KRA/git_repos/KRA/logs/validation/HUMAN/executor_human.log [Parameters]output_format_iprscan = TSVcpu_cores_iprscan = 11number_jobs_iprscan = 1seq_batch_size_iprscan = 2000analyses_iprscan = panther,pfam,smart,gene3d,superfamily,prositepatterns,prositeprofiles,pirsfenable_precalc_iprscan = True # Should be False in actual use with novel proteinsdisable_res_iprscan = Falsethreads = 11total_memory = 14nucleotide = falseeco_codes =