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Data from: BBGD: an online database for blueberry genomic data

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agdatacommons.nal.usda.gov2023-11-30 更新2025-01-21 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Data_from_BBGD_an_online_database_for_blueberry_genomic_data/24660177/1
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This dataset is supplemental to the article "BBGD: an online database for blueberry genomic data," (2007); it is titled "list of genes printed on microarray slides." The article, "BBGD: an online database for blueberry genomic data," (2007) involving blueberry cold hardiness experiments has a list of all the genes that were printed on microarray slides. This dataset, supplemental to the article, is called: "list of genes printed on microarray slides." 1471-2229-7-5-s1.xls 663k. By using the BBGD database, researchers developed EST-based markers for mapping, and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures. BBGD (http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. Data was collected sometime between 2000 and 2007 - exact dates are unknown. Resources in this dataset:Resource Title: List of genes printed on microarray slides, 1471-2229-7-5-s1.xls. File Name: 1471-2229-7-5-s1.xlsResource Title: Data dictionary. File Name: BBGD-data-dictionary.csvResource Description: Defines fields for list of genes.

本数据集作为《BBGD:蓝莓基因组数据在线数据库》一文(2007年)的补充资料,其标题为“微阵列芯片上打印的基因列表”。该文探讨了蓝莓的抗寒性实验,列出了所有打印在微阵列芯片上的基因。本数据集作为补充资料,被称为“微阵列芯片上打印的基因列表”(1471-2229-7-5-s1.xls,文件大小为663k)。通过利用BBGD数据库,研究人员开发了基于EST的标记以进行基因定位,并识别出在低温处理后蓝莓花蕾中高表达的“候选”抗寒基因。BBGD(http://bioinformatics.towson.edu/BBGD/)是一个公开的在线数据库,旨在服务于蓝莓基因组学的研究。BBGD既是一个序列数据库,也是一个基因表达数据库:它存储了EST和微阵列数据,并允许科学家将表达谱与基因功能进行关联。目前,数据库的主要焦点是识别在低温处理后显著诱导或抑制的蓝莓基因。数据收集时间介于2000年至2007年之间,具体日期不详。本数据集包含的资源有:资源标题:微阵列芯片上打印的基因列表,文件名:1471-2229-7-5-s1.xls;资源标题:数据字典,文件名:BBGD-data-dictionary.csv;资源描述:定义了基因列表的字段。
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