Data for: Heterosigma akashiwo transcriptome gene annotations
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https://datadryad.org/dataset/doi:10.5061/dryad.m0cfxpp56
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资源简介:
Heterosigma akashiwo is a eukaryotic, cosmopolitan, and unicellular alga
(class: Raphidophyceae), and produces fish-killing blooms. There is a
substantial scientific and practical interest in its ecophysiological
characteristics that determine bloom dynamics and its adaptation to broad
climate zones. A well-annotated genomic/genetic sequence information
enables researchers to characterize organisms using modern molecular
technology. In the present study, we conducted H. akashiwo RNA sequencing,
a de novo transcriptome assembly of 84,693,530 high-quality deduplicated
short-read sequences. The obtained RNA reads were assembled by
Trinity assembler and 144,777 contigs were identified with N50 values of
1085. The raw data were deposited in the NCBI SRA database (BioProject
PRJDB6241 and PRJDB15108), and the assemblies are available in NCBI TSA
database (ICRV01). Total 60,877 open reading frames with the
length of 150 bp or greater were predicted. Here, the top Gene Ontology
terms, the pfam hits, and the BLAST hits were annotated for all the
predicted genes, and shared as text files.
提供机构:
Dryad
创建时间:
2023-03-13



