Additional file 7 of An intronic LINE-1 regulates IFNAR1 expression in human immune cells

Additional file 7: Supplemental Table 6. DESeq Differential Expression Analysis Outputs. Tabular outputs of differential sequencing analysis using DESeq2 [48], including comparisons of clonal wildtype cell lines 2D3, 2D9, and 2F3 against clonal knockout cell lines L3.A4, L3.E4, MN6.G11, and MN8.C12. Likelihood ratio test analysis across a timecourse of 0hr, 4hr, 12hr, and 12 hr IFNβ treatment is also included, as is comparison of 0hr against 4hr IFNβ treatment in the wildtype clonal cell lines. Normalized counts are also listed for non-clonal wildtype cells, but were not included in the differential analysis.