Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: statistical methods and their application to honeybee

This repository contains the necessary files to perform the analysis presented in the paper: SE Eynard, A Vignal, B Basso, Y Le Conte, A Decourtye, L Genestout, E Labarthe, F Mondet, K Tabet, B Servin (2022). Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: Statistical methods and their application to honeybee. https://doi.org/10.1111/1755-0998.13685 It includes the parameter files needed for the simulations, the file containing allele frequencies for the reference populations as well as the pool-sequence data needed for the validation of the model on real data.