Additional file 2 of Transcriptomic biomarker pathways associated with death in HIV-infected patients with cryptococcal meningitis

Additional file 2. Table S2. Fold change in expression for genes within phagocytes- and T cell pathways, in Death without C-IRIS group at week 0. The comparison performed between Death without C-IRIS groups and No C-IRIS or Death groups (from early and deferred ART arms combined).Benjamini-Hochberg-corrected Z scores that are < 1 for these pathways’ identification, (are equal to ‘not significant for all’). The expression fold changes, and p-values are calculated by ANOVA-REML (see methods). Expression p-value, with no FDR (no false discovery rate) applied, are shown.