Additional file 3 of A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics

Additional file 3: Table S2: Arabidopsis differentially expressed genes (DEGs) in response to Fo5176 infection over time. (Sheet 1) Significant DEGs in Arabidopsis roots upon infection with Fo5176 at different time points after treatment (dpt) with Fo5176 microconidia compared to mock-treated roots. Logarithmic fold-change (logFC) and corrected p-value (FDR) are presented in columns for each time point separately, gaps correspond to non-significant changes in gene expression at those time points. The genes are clustered based on their co-expression (Figure 2A). DEGs with the entry “no cluster” were not associated to a cluster by the clustering algorithm. Genes encoding proteins containing a CAZY-domain or related with plant cell wall biology are highlighted in yellow and orange, respectively. (Sheet 2) GO-enrichment analysis of the clusters from (Sheet 1). GO-ID: Gene ontology identifier, GO-term: Gene ontology descriptive term, Bonferroni-corrected p-value, % of associated genes: percentage of genes in that GO-term that are present in the analyzed cluster, No. of genes: absolute number of genes associated to the GO-term.