jrc_mus-liver organelle predictions

A collection of ground truth data, raw predictions, and refined predictions performed on a mouse liver FIB-SEM dataset. This dataset captures a region within the mouse liver that includes several structures of metabolic significance. The data set contains profiles of many complete hepatocytes and their surrounding sinusoids and bile ductules. Some hepatocytes show two nuclei due to their enormous metabolic activity. Perforated endothelial cells and Kupffer cells form the lining of sinusoids. Inside each hepatocyte, many metabolic relevant organelles such as ER, mitochondria, lipid droplets and their structural relationship can be visualized in their entirety. Sample: Wild-type, 8 week old mouse, strain: C57BL/6 from Jackson Lab Dataset ID: jrc_mus-liver EM Data DOI: 10.25378/janelia.16913047 EM voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z) Segmentation voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z) Dataset URL: https://data.janelia.org/dyugw Visualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-liver Segmented Organelles: ER, ER mem, Nucleus, PM, Mito, Mito mem, ECS Included in Dataset: predictions, segmentations, ground truth

本数据集为针对小鼠肝脏聚焦离子束扫描电子显微镜（FIB-SEM）样本生成的基准真值（ground truth）数据、原始预测结果与精修预测结果的集合。该数据集涵盖小鼠肝脏内多个具有代谢重要性的结构区域，包含大量完整肝细胞及其周边血窦与胆管小管的轮廓信息。部分肝细胞因极高的代谢活性呈现双核形态。血窦内壁由穿孔内皮细胞与库普弗细胞构成。在每个肝细胞内部，诸多与代谢相关的细胞器——如内质网（ER）、线粒体、脂滴——及其结构关联均可被完整可视化。
样本信息：8周龄野生型小鼠，品系为来自杰克逊实验室（Jackson Lab）的C57BL/6
数据集ID：jrc_mus-liver
电子显微镜（EM）数据DOI：10.25378/janelia.16913047
电子显微镜体素尺寸（纳米）：8.0×8.0×8.0（X、Y、Z轴）
分割体素尺寸（纳米）：8.0×8.0×8.0（X、Y、Z轴）
数据集链接：https://data.janelia.org/dyugw
可视化网站：https://openorganelle.janelia.org/datasets/jrc_mus-liver
分割细胞器：内质网（ER）、内质网膜（ER mem）、细胞核（Nucleus）、细胞膜（PM）、线粒体（Mito）、线粒体膜（Mito mem）、细胞外间隙（ECS）
数据集包含内容：预测结果、分割结果、基准真值数据