For a more detailed description of all the worksheets in the supplementary files the reader is directed to the DRYAD repository: doi.org/10.5061/dryad.6wwpzgn74. (XLSX)
A large number of computational methods have been recently developed for analyzing differential gene expression (DE) in RNA-seq data. We report on a comprehensive evaluation of the commonly used DE me
Bulk RNA-seq for normal liver cells, and early HCC cells from DEN-induced mice with hepatocyte-specific depletion of Mef2d or not. scRNA-seg for liver PME and TME from DEN-induced mice with hepatocyte
