Nanostring_GeoMx_HCC_9_2_24.csv

To investigate the transcriptional changes within tumor cell and macrophage neighborhoods of HCC, we performed spatially resolved transcriptomics using Nanostring GeoMx. We separately quantified the expression of 1812 genes within tumor-cell (pan CK+ve, CD45-/CD68-) and macrophage (pan CK-ve, CD45+/CD68+) areas of interest (AOIs). A total of 105 AOIs (macrophage (n=53) and epithelial (n=52) AOIs are included. We have uploaded the normalized expression profile of all the genes along with the sample annotation.