Implications of liquid-liquid phase separation in plant chromatin organization and transcriptional control

ICE_normalized_insituHiC_Col_on_hyb_20k.zip:<br>The normalized Arabidopsis thaliana Hi-C matrix (20 kb) reported in: Zhu W, Hu B, Becker C, Dogan ES, Berendzen KW, Weigel D, Liu C: Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. Genome Biol 2017, 18:157.<br>KEE.txt: <br>coordinates of KEEs reported in: Grob S, Schmid MW, Grossniklaus U: Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. Mol Cell 2014, 55:678-693.<br>generate_Fig2_plots.R:R scripts to generate plots. (shown as panels a-d in file "Fig2.jpg"). It requires "KEE.txt" and "ICE_normalized_insituHiC_Col_on_hyb_20k" as input files.<br>