Phylogenetic tree for plant protein-S-acyltransferases (PAT) described in Pukhovaya et al., 2026 (Fig. 5A).
收藏资源简介：
Folder original_tree contains multiple sequence alignment and other intermediate files to construct phylogenetic tree, as well as resulted contree file (see Mutte and Weijers, 2020).Folder processed_tree contains all the files to reproduce iTOL analysis: original tree file, taxonomy annotations, collapsed clades, trivial names for Arabidopsis and Marchantia PATs.Use PAT_tree_processed_NEWICK_trivialnames.txt/PAT_tree_processed_NEXUS_trivialnames.txt with annotation files PAT_tree_processed_all_annotations_trivialnames.txt and iTOL_LabelColors_Arabidopsis_Marchantia_with_gene_names.txt to recreate PAT_phylogenetic_tree_full.pdf.Add PAT_tree_processed_collapsed_nodes_list.txt and PAT_tree_processed_collapsed_nodes_labels.txt on top to collapse PAT clades and get PAT_tree_with_collapsed_clades.pdf.
