Additional file 4 of FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum

Supplementary Material 4. Table S4. Detailed FoTeR integration site information and flanking sequence architecture. This table illustrates the structural organization of FoTeR and truncated FoTeR (tFoTeR) insertions at chromosomal ends of each strain, detailing strand-specific junction features, including flanking repeat sequences, adjacent telomeric repeats, and copy number estimates for both 5′ and 3′ ends of FoTeR insertions. Repeat sequences are annotated with motif identity and approximate tandem copy number; for example, 'TAACCC/3.5' indicates the motif 'TAACCC' is repeated 3.5 times. The status of each FoTeR element (full-length or truncated) is displayed in the column 'FoTeR/tFoTeR.' Full-length FoTeR elements are designated as 'FoTeR.' Truncated FoTeRs (tFoTeRs) are denoted by their genomic coordinates within parentheses, where the coordinates indicate the start and end positions of the identified truncated element. For example, (1-145) signifies a tFoTeR truncated from its 3' end at location 145 bp, while (4494-6201) indicates a tFoTeR truncated from its 5' end at location 4494 bp. Asterisks (*) in columns detailing telomeric repeats of tFoTeRs indicate that tFoTeR/s in that chromosome end in that strain were truncated at the respective end, so there is no telomeric association with that end.