Uric Acid and Urea Cycle Pathways Define Inflammasome-Independent Metapyroptotic Licensure
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<b>Liquid Chromatography Mass Spectrometry based Metabolomics</b>Tributylamine and all synthetic molecular references were purchased from Millipore Sigma. LCMS grade water, methanol, isopropanol and acetic acid were purchased through Fisher Scientific. Aqueous metabolites were analyzed using a combination of two analytical methods with opposing ionization polarities. Both methodologies utilized a LD40 XR UHPLC (Shimadzu Co.) system for separation and a 6500+ QTrap mass spectrometer (AB Sciex Pte. Ltd.) for detection. Negative mode samples were separated on a Waters™ Atlantis T3 column (100Å, 3 µm, 3 mm X 100 mm) and eluted using a binary gradient from 5 mM tributylamine, 5 mM acetic acid in 2% isopropanol, 5% methanol, 93% water (v/v) to 100% isopropanol over 5 minutes. Two distinct MRM pairs in negative mode were used for each metabolite. Positive mode method samples were separated across a Phenomenex Kinetex F5 column (100 Å, 2.6 µm, 100 x 2.1 mm) and eluted with a gradient from 0.1 % formic acid in water to 0.1 % formic acid in acetonitrile over 5 minutes.<b>Metabolomics Data Processing </b>All signals were integrated using SciexOS 3.1 (AB Sciex Pte. Ltd.). Signals with greater than 50% missing values were discarded and remaining missing values were replaced with the lowest registered signal value. Where appropriate, signals with a QC coefficient of variance greater than 30% were discarded. Metabolites with multiple MRMs were quantified with the higher signal to noise MRM. The filtered dataset of the negative mode aqueous metabolites were total sum normalized after initial filtering. The positive mode aqueous metabolomics dataset was scaled and combined with the negative mode aqueous metabolite dataset using common signal for glutamine.
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figshare
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2025-10-22



