Genotypes file for genetic map

This file is the input data file used for map construction in joinmap format (.loc) produced by the program Stacks 1.3.5 assuming a cp cross design. The first column gives the locus ID assigned to each marker by the program Stacks 1.3.5. The next column gives the segregation type code for each marker using the joinmap 4 convention. Each subsequent column provides the genotypes for an individual for all 9029 markers. Missing data is coded as “--“. The ID for each individual is given as a list in the first column underneath the last locus ID.