Additional file 2 of Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing

Additional file 2: Table S1. Genotype accuracy and concordance of imputation obtained with the three pipelines on 15 individuals. Table S2. Genotype accuracy and concordance of imputation by the three pipelines with the MAF ranges. Table S3. Genotype accuracy and concordance of imputation with different sample size and depth by BaseVar + STITCH. Table S4. Variant analysis by regions and functions. Table S5. LD decay in the Angora rabbit population. Table S6. Genes located in the selected regions in the Angora rabbit population. Table S7. Enrichment of genes located in the selected regions in the Angora rabbit population. Table S8. LD decay in the Angora and wild rabbit populations. Table S9. Genes located in the selected regions between Angora and wild rabbits. Table S10. Enrichment of genes located in the selected regions between Angora and wild rabbits. Table S11. Genes located in the common regions between within-breed and cross-breed signatures of selection. Table S12. Enrichment of genes located in the common regions between within-breed and cross-breed signatures of selection. Table S13. Significant SNPs for DFW. Table S14. Significant SNPs for CVDFW. Table S15. Significant SNPs for LFW. Table S16. Significant SNPs for BW. Table S17. SNP-based heritability. Table S18. QTL contribution to phenotypic variance. Table S19. Genes overlapping with by QTL.