Desert v. Vinegar Flies: Eye Allometry

Instructions needed to generate the statistics and figures used in Eye Allometry results:

Make sure Python 3.6+ and the following Python packages are installed (try pip):
-matplotlib
-numpy
-pandas
-pickle
-scikit-image
-scipy
-seaborn
-statsmodels-eye_tools (from https://github.com/jpcurrea/eye_tools.git)

A. Plot figures and calculate important statistics:
In the terminal, cd to the downloaded folder and run the following:
~! python3 plot.py
Running this script produces the following image files:
-eye_composition.png
-eye_composition.svg
-eye_shape.png
-eye_shape.svg
-fields_of_view.png
-fields_of_view.svg
-optical_performance.png
-optical_performance.svg

We've also already saved the following files:
-stats.txt: allometric statistics collated by measurement
-stats.csv: allometric statistics used for table

B. To generate the allometric data from scratch:
1. unzip image_stacks.zip, creating a folder of the same name
2. run the following:
~! python3 analysis.py
Running this script produces the following:
-allometry_data.csv: readable measurements dataframe
-allometry_data.pkl: pickled measurements dataframe
3. to plot the data, running process A. above.
C. To generate Supplemental Figure 2, cd to the downloaded folder and run the following:
~! python3 plot_demo.py