S3 Fig -

Genes’ expression level measured by RT-qPCR compared with the fold change produced using Hi-Seq data for the chickens infected with Eimeria maxima raised under HS (HSi) and their uninfected HS control (HSc) at 6 day-post-treatment at (HSc vs. HSi) (A), and the correlation test shows the correlation coefficient (r) of the expression values produced by either method (B). Taking the expression values of the HSc as the control for the relative expression of the HSi group brought the expression values of the HSc group to 1 (Livak’s method). Error bars depict the SEM. (ZIP)