Supplementary Datasets for PhD thesis of Maximillian R. W. Jones

Chapter 2 Supplementary Data 2.1 – Matrix of shared k-mer state rates between all pairs of accessions Supplementary Data 2.2 – Loci for minimal SNP panel plus observed genotypes for 150 non-redundant accessions Supplementary Data 2.3 – Details of 183 selected metabolites Supplementary Data 2.4 – Scaffold from the Tsedey genome assembly by Cannarozzi et al. (2014) containing the A genome copy of the tef TT2 orthologue (Et_4A_032842). Supplementary Data 2.5 – Scaffold from the Tsedey genome assembly Cannarozzi et al. (2014) containing the B genome copy of the tef TT2 orthologue (Et_4B_039404) Supplementary Data 2.6 – Details of accessions used in the study Supplementary Data 2.7 – Original field trial design and updated field trial design based on definition of redundant accession groups Supplementary Data 2.8 – Raw field and grain phenotypic data Supplementary Information 2 – Contains Supp. Tables and Supp. Note 2.1 (additional Information on genotyping of the core collection with a minimal SNP set) Chapter 3 Supplementary Data 3.1 – Counts and TPMs for all IWGSC RefSeq v1.1 genes in semi-spatial spike RNA-seq samples Supplementary Data 3.2 – Information on primers used in this chapter Supplementary Data 3.3 – Gel electrophoresis analyses of additional MJ_GG24 cDNA samples Supplementary Data 3.4 – Numbers of significant interactions from stepwise linear models of floral organ size parameters Supplementary Data 3.5 – DESeq2 differential expression results for basal and central spike section comparisons Supplementary Data 3.6 – L0 parts and L2 constructs used in this chapter Supplementary Data 3.7 – Detailed methodology for MOF/mof1 organ size image processing using ImageJ/FIJI Supplementary Data 3.8 – MJ_GG18 phenotyping Supplementary Data 3.9 – MJ_GG19 phenotyping Supplementary Data 3.10 – MOF/mof1 gross phenotyping Supplementary Data 3.11 – Raw MOF/mof1 organ size data Supplementary Data 3.12 – Raw MOF/mof1 floral organ images Chapter 4 Supplementary Information 4 – contains Supp. Note 4.1 (tagmentation protocol)