Additional file 3 of Transcriptome and proteome profiling reveal complementary scavenger and immune features of rat liver sinusoidal endothelial cells and liver macrophages

Additional file 3. Genes and proteins associated with immune system processes. Excel file (.xls) with the list of genes and proteins associated with the term immune system processes (GO:0002376) presented in the two heatmaps in Fig. 5a, along with their associated expression values (RPKM, or iBAQ). The two worksheets are named “Immune genes_RPKM_RNAseq”, and “Immune genes_iBAQ_proteomics”. Of note, for visualization, log2(RPKM+ 1) and log2(iBAQ+ 1) were used in the heatmaps in Fig. 5a.