Patterns in bird and pollinator occupancy and richness in a mosaic of urban office parks across scales and seasons

# Patterns in bird and pollinator occupancy and richness in a mosaic of urban office parks across scales and seasons ## Description of the data and file structure Scripts repository: * 00_shared_functions: code sourced in higher-level scripts * 01_bird_spoccupancy: code to run avian dynamic multispecies models and model predictions using R package spOccupancy. * 02_pollinators: code to run Poisson regressions for pollinator data. * 01_manuscript_values.R: code that extracts general values for the manuscript, including tables and plots * 02_spatial_autocorrelation.R: spatial autocorrelation analysis for both birds and pollinators * 03_species_probability_bar_chart_occupancy.R: code for producing appendix figure * 04_species_probability_bar_chart_detection: code for producing appendix figure * 05_occupancy_summary_panel.R: code for producing main text Figure 2 * 06_best_worst_site_values.R: code for producing main text Figure 3 * 07_richness_change.R: code for summarizing predicted richness change for changes in environmental variables. Data repository: * model_data.RDS: bird data structured for input to the spOccupancy R package. * pollinator_survey_data.RDS: pollinator survey data ## Code/Software Scripts were run using R and packages available through the CRAN R package repository. Scripts are numbered in order of intended use.