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资源简介：
90 chicken DNA samples
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创建时间：
2023-01-06
相关数据集
Additional file of First complete genome sequence of infectious laryngotracheitis virus
Additional file of First complete genome sequence of infectious laryngotracheitis virus
Figshare2020-08-27 更新140
This study is the first whole-genome sequencing study of Yeonsan Ogye Black chicken(Korean indigenous chicken). we identify the nucleotide diversity, linkage disequilibrium pattern, phylogenetic tree analysis, genetic differentiation, admixture analysis, and genome-wide selection analysis across the 188 chickens from 13 populations. We identified the selection signature of OGYE. Our results showed that the OGYE preserved unique genetic characteristics, both phenotypic and genotypic, distinguished from other chicken breeds. Importantly, we identified RNASEL, BRIP1, HSP90AA1, and TLR4 gene regions as essential for promoting the innate immune system, while the SPP1 gene might be essential for developing eggshells in OGYE. Together, our result provides novel insights into the chicken breeding program to manage risk and vulnerability through the indigenous animal genetic resource and facilitate the conservation of OGYE.. Comparative genomics and selection analysis of Yeonsan Ogye Black chic
Yeonsan Ogye (OGYE; Gallus gallus domesticus) is one of the rare indigenous chicken breeds habiting in the Korean Peninsula. As a unique morphological feature, the OGYE breed has entirely black plumag
NIAID Data Ecosystem40
Regions of putative selection identified in this study using a window size of 5 markers.
1) Position based on chicken genome build WASHUC2. ZHp values are shown for each region for each breed group. Values in bold values are less than or equal to -6. DM = domesticated, CM = commercial, NC
Figshare2015-12-02 更新30
Gallus gallus breed:REL Genome sequencing. Gallus gallus breed:REL
Genome resequencing of ascites susceptible and resistant, male and female broilers
NIAID Data Ecosystem30
