Nanoscale Dynamics of Enhancer-Promoter Interactions during Exit from Pluripotency

This Zenodo repository contains data generated for our manuscript. 

It contains:

fig1.csv: color/shift corrected, pairwise enhancer-promoter coordinates and distances, in naive and primed mouse embryonic stem cells (mESCs), measured with a spinning disk confocal microscope

fig2.csv: multiway enhancer-promoter coordinates and distances for promoters with all their enhnacers, in naive and primed mESCs, measured with a STED mircoscope

fig3.csv: coordinates and distances between the Dppa3 promoter, its closest ehnacer and closest intron RNA, in naive mESCs, measured with a STED microscope

region_coordinates_mm9.csv: target names (promoters and enhnacers by the distance from their promoter) and the coordinates of the probed genomic region in mm9