Network of inferred transcription factor–cluster associations

Column 1 indicates the target gene cluster. Column 2 indicates the transcription factor gene that is associated with the cluster, based on the two sources of evidence. Column 3 indicates the cluster of which the transcription factor gene is a member. Column 4 indicates the -log10P value of the promoter scanning-based evidence. Column 5 indicates the name of the position-weight matrix that had the smallest scanning-based P value of association with the cluster, for the indicated transcription factor gene (the “V$” prefix is not shown). Column 6 indicates the fraction of scanned genes within the cluster that had at least one match for the indicated position-weight matrix. Column 7 contains the number of scanned genes within the cluster that had at least one match for the indicated position-weight matrix. Column 8 indicates the negative log10P value of the time-lagged correlation evidence. Column 9 indicates the cluster-wide average time lag θ with respect to the indicated transcription factor gene. Column 10 contains the average optimal time-lagged correlation between the indicated transcription factor gene, and the genes within the cluster.