Supporting data for "Quality control for the target decoy approach for peptide identification"

Supporting data for the manuscript "Quality control for the target decoy approach for peptide identification". Input files are raw mass spectrometry runs, to be downloaded from the PRIDE Archive (https://www.ebi.ac.uk/pride/), which can be processed with the parameter files, Nextflow workflow, and Python scripts in "workflow-scripts-parameters.zip". The resulting output files that were used for the manuscript are provided in search-results.zip.