相关数据集
NG Capture-C analysis of GADD45a-bound adipogenic super-enhancers
ING1b and GADD45a are nuclear proteins involved in the regulation of cell growth, apoptosis and DNA repair. We previously found that ING1b is essential to target GADD45a-mediated active DNA-demethylat
NIAID Data Ecosystem70
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sampl
NIAID Data Ecosystem50
Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.
We performed SMC1-mediated ChIA-PET analysis in both shBORIS and shLUC resistant Kelly cells. Overall design: SMC1 ChIA-PET data from shBORIS and shLUC resistant Kelly cells were generated by deep seq
NIAID Data Ecosystem30
Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.
We designed 4C-Seq experiments for hoxa13a, hoxa13b and hoxd13a promoters in three developmental stages in zebrafish embryos: 24, 48 and 60 hpf. 4C-seq samples for three different hox13 genes promoter
NIAID Data Ecosystem60
MC-4C: Enhancer hubs and loop collisions identified from single-allele topologies
Chromatin folding is increasingly recognized as a regulator of genomic processes such as gene activity. Chromosome conformation capture (3C) methods have been developed to unravel genome topology thro
NIAID Data Ecosystem40
