Preliminary phylogenetic and plasmid data for microbial laccase, fluorinase, dehalogenase, and glycyl radical enzymes

This dataset includes preliminary raw data associated with Berkeley's Superfund Project 3, 2022-2024, investigating microbial enzymatic degradation of halogenated contaminants in situ. These initial data include uncurated FastTree and maximum likelihood treefiles for various bacterial laccases sourced from the LccED (Graff et al 2020), fluorinases, and dehalogenases; plasmid maps for laccase and glycyl radical enzyme expression; and various scripts/notebooks (in Python) used for data curation and visualization.