Gene-level counts and TPM values across distinct organs in cannabis, hop and tomato
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The RNA-seq reads were aligned in a species-specific manner against the cannabis (cv. cs10 v2.0; GCF_900626175.2 from NCBI), hop (cv. Cascade; GCF_963169125.1 from NCBI) and tomato (cv. Heinz 1706; SL4.0 from https://solgenomics.net/) reference genomes using Hisat2 v 2.2.1. The mapped reads were sorted by genomic location using samtools v1.9. Gene-level quantification was performed using featureCounts from Subread v2.0 and transcript per million (TPM) counts were generated from the mapped reads using StringTie v2.1.3.
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Zenodo创建时间：
2025-11-21
