Genome assembly, genomic features, and information on raw sequencing data generated in this study.

(A) List of Cryptococcus and Kwoniella isolates used in this study and summary of genome assembly statistics and other genomic features. (B) Genome sequencing, assembly, and polishing approaches. (C) NCBI accession numbers of each genome and raw read data generated and used in this study. (D) Centromere coordinates and telomeric sequences. (E) Gene genomic coverage and GC content in Kwoniella species containing mini-chromosomes. (F) Genomic features (genome size, number of protein coding genes, number of introns in coding sequences (CDSs), mean intron length, and number of introns in CDSs) and associated statistical tests. (G) Reference genome assemblies of C. gattii species complex and C. deneoformans JEC21 available prior to this study. (XLSX)