遇见数据集

How much does Ne vary among species? Site Frequency Spectrum data

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Zenodo2020-05-09 更新2026-04-07 收录
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<br> This directory contains Site Frequency Spectra (SFS) data analyzed by Galtier &amp; Rousselle 2020, https://www.biorxiv.org/content/10.1101/861849v1 All files are in DoFE format (see http://www.lifesci.susx.ac.uk/home/Adam_Eyre-Walker/Website/Software.html), with the additional #unfolded annotation when required. There are four subdirectories: - primates_fruitflies: unfolded SFS from 5 species of primates and 5 species of fruitflies, all mutations and GC-conservative mutations only.<br> - Rousselle_et_al_2019: unfolded SFS from 50 species from 10 groups of animals, all mutations and GC-conservative mutations only.<br> - Chen_et_al_2017: folded SFS from 23 species of animals, all mutations; please note that the Chen et al. 2017 SFS, although folded, are encoded as unfolded for consistency.<br> - Galtier_2016: unfolded SFS from 28 species of animals, all mutations. Example command lines: #Gamma<br> multi_grapes1.1 -in primates_fruitflies.dofe -out pf.csv -model GammaZero -fold<br> #Gamma+lethal, plth=0.6<br> multi_grapes1.1 -in primates_fruitflies.dofe -out pf.csv -model GammaZero -p_lethal 0.6 -fold<br> #Reflected Gamma+lethal, plth=0.6<br> multi_grapes1.1 -in primates_fruitflies.dofe -out pf.csv -model ReflectedGamma -p_lethal 0.6 -fold<br> #Gamma+lethal, plth=0.6, unfolded<br> multi_grapes1.1 -in primates_fruitflies.dofe -out pf.csv -model GammaZero -p_lethal 0.6

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2020-05-09
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