RICD

Rice Indica cDNA Database (RICD) is an online MySQL-PHP driven database with a user-friendly web interface. It allows investigators to query the cDNA clones by keyword, genome position, nucleotide or protein sequence, and putative function. It also provides a series of information, including sequences, protein domain annotations, similarity search results, SNPs and InDels information, and hyperlinks to gene annotation in both The Rice Annotation Project Database (RAP-DB) and The TIGR Rice Genome Annotation Resource, expression atlas in RiceGE and variation report in Gramene of each cDNA.

搜集汇总

背景与挑战

背景概述

RICD数据集是一个水稻籼稻亚种的全长cDNA资源库，包含广陆矮4号和明恢63两个品种的转录组数据，分别提供约10,081和12,727个全长cDNA序列。该数据集由中国科学院和华中农业大学等机构开发，旨在支持功能基因组学研究和籼稻与粳稻亚种的转录组比较，以促进水稻分子育种。