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"The prolactin receptor scaffolds Janus kinase 2 via co-structure formation with phosphoinositide-4,5-bisphosphate" -- MD Trajectories

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https://zenodo.org/record/7011480
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资源简介:
MD trajectories and related files for the simulations related to the work: "The prolactin receptor scaffolds Janus kinase 2 via co-structure formation with phosphoinositide-4,5-bisphosphate" by Araya-Secchi R., Bugge K. and Seiffert et al.  This dataset contains: 1) Trajectories of CG-MD simulations of PRLR-LID1 in lipid bilayers with POPC on the upper leaflet and two compositions on the lower leaflet: POPC:POPS:PIP2 80:10:10 and 90:5:5. These simulations were performed using the open beta version of the Martini 3 (3.b3.2) force field modified to increase the strength of Protein-water interactions by 10% (m3pws10). 2) Trajectory of the all-atom simulation of the JAK2-FERM-SH2 + PRLR-LID1 complex in solution. 3) Trajectories of CG-MD simulations of the JAK2-FERM-SH2 + PRLR-LID1 complex near a POPC:POPS (70:30) bilayer (8 initial conformations) performed using the Martini2 forcefield. 4) Trajectories of CG-MD simulations of the JAK2-FERM-SH2 + PRLR-LID1 complex near a POPC:POPS:PIP2 (80:10:10) bilayer (16 initial conformations) performed using the Martini2 forcefield.
创建时间:
2022-11-06
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